Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.95□□□□□ -0.02
BDNFP23560 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 RPS2P36-201ENST00000456516 831 ntBASIC14.95□□□□□ -0.02
BDNFP23560 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC14.95□□□□□ -0.02
BDNFP23560 AC095040.1-201ENST00000513286 675 ntBASIC14.95□□□□□ -0.02
BDNFP23560 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC14.95□□□□□ -0.02
BDNFP23560 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.95□□□□□ -0.02
BDNFP23560 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
BDNFP23560 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 AC084781.1-201ENST00000613737 656 ntBASIC14.95□□□□□ -0.02
BDNFP23560 YRDCP1-201ENST00000621419 643 ntBASIC14.95□□□□□ -0.02
BDNFP23560 AC009145.4-201ENST00000625119 1294 ntBASIC14.95□□□□□ -0.02
BDNFP23560 AC007326.2-201ENST00000624224 7579 ntBASIC14.95□□□□□ -0.02
BDNFP23560 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.95□□□□□ -0.02
BDNFP23560 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
BDNFP23560 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
BDNFP23560 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
BDNFP23560 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
BDNFP23560 KC6-207ENST00000600644 2311 ntTSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
BDNFP23560 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 TCAM1P-207ENST00000485295 1537 ntBASIC14.94□□□□□ -0.02
BDNFP23560 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
BDNFP23560 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.94□□□□□ -0.02
BDNFP23560 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.94□□□□□ -0.02
BDNFP23560 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.94□□□□□ -0.02
BDNFP23560 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.94□□□□□ -0.02
BDNFP23560 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 RN7SL181P-201ENST00000462921 277 ntBASIC14.94□□□□□ -0.02
BDNFP23560 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 AC138701.2-201ENST00000553634 226 ntBASIC14.94□□□□□ -0.02
BDNFP23560 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC14.94□□□□□ -0.02
BDNFP23560 SIGLEC22P-201ENST00000599104 714 ntBASIC14.94□□□□□ -0.02
BDNFP23560 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC14.94□□□□□ -0.02
BDNFP23560 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14.94□□□□□ -0.02
BDNFP23560 AP001184.1-201ENST00000637936 376 ntBASIC14.94□□□□□ -0.02
BDNFP23560 AL365209.1-201ENST00000624418 6473 ntBASIC14.94□□□□□ -0.02
BDNFP23560 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.94□□□□□ -0.02
BDNFP23560 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.94□□□□□ -0.02
BDNFP23560 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC14.94□□□□□ -0.02
BDNFP23560 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.94□□□□□ -0.02
BDNFP23560 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
BDNFP23560 MST1P2-201ENST00000457982 2291 ntBASIC14.94□□□□□ -0.02
BDNFP23560 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.93□□□□□ -0.02
BDNFP23560 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.93□□□□□ -0.02
BDNFP23560 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.93□□□□□ -0.02
BDNFP23560 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms