Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 RPL13P2-201ENST00000440687 659 ntBASIC10.09□□□□□ -0.79
CKS1BP61024 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC023141.5-201ENST00000458585 616 ntBASIC10.09□□□□□ -0.79
CKS1BP61024 SATB1-217ENST00000493952 626 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC10.09□□□□□ -0.79
CKS1BP61024 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 LINC01115-203ENST00000606068 577 ntBASIC10.09□□□□□ -0.79
CKS1BP61024 AC004461.2-201ENST00000629517 803 ntBASIC10.09□□□□□ -0.79
CKS1BP61024 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 RERG-209ENST00000546331 1383 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 GOLGA6L17P-202ENST00000614358 1398 ntBASIC10.09□□□□□ -0.79
CKS1BP61024 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 SPHK2-208ENST00000599029 3085 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 KCNH1-209ENST00000639952 8075 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 USP4-203ENST00000415188 1454 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC10.09□□□□□ -0.79
CKS1BP61024 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 CRHR1-206ENST00000398285 2399 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC10.09□□□□□ -0.79
CKS1BP61024 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 PLEKHM1P1-205ENST00000582986 5014 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 AL713866.1-201ENST00000563320 3125 ntBASIC10.09□□□□□ -0.79
CKS1BP61024 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC10.09□□□□□ -0.79
CKS1BP61024 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC10.09□□□□□ -0.79
CKS1BP61024 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
CKS1BP61024 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
CKS1BP61024 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 TMEM8B-201ENST00000377988 3731 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 PTCH1-209ENST00000437951 8049 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 NCDN-202ENST00000373243 3683 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 GBP1P1-201ENST00000394662 1740 ntBASIC10.08□□□□□ -0.8
CKS1BP61024 EIF3C-209ENST00000566501 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 RHPN1-AS1-201ENST00000518049 1918 ntBASIC10.08□□□□□ -0.8
CKS1BP61024 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 AC027369.3-201ENST00000530465 3707 ntBASIC10.08□□□□□ -0.8
CKS1BP61024 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC10.08□□□□□ -0.8
CKS1BP61024 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC10.08□□□□□ -0.8
CKS1BP61024 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC10.08□□□□□ -0.8
CKS1BP61024 AP001059.3-201ENST00000619053 235 ntBASIC10.08□□□□□ -0.8
CKS1BP61024 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC10.08□□□□□ -0.8
CKS1BP61024 RAB34-224ENST00000636513 888 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 SOX30-201ENST00000265007 3265 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 LGR6-203ENST00000367278 3567 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 MVK-214ENST00000629016 1591 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 SPTB-204ENST00000389722 10063 ntTSL 2 BASIC10.08□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms