Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.48□□□□□ -0.25
SOX3P41225 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX3P41225 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX3P41225 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
SOX3P41225 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 FAM90A7P-201ENST00000382628 1395 ntBASIC13.47□□□□□ -0.25
SOX3P41225 FAM90A23P-201ENST00000400136 1395 ntBASIC13.47□□□□□ -0.25
SOX3P41225 AC144522.1-201ENST00000625111 1658 ntBASIC13.47□□□□□ -0.25
SOX3P41225 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.47□□□□□ -0.25
SOX3P41225 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 AC006122.1-201ENST00000493323 440 ntBASIC13.47□□□□□ -0.25
SOX3P41225 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX3P41225 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.47□□□□□ -0.25
SOX3P41225 AL645939.5-201ENST00000606834 243 ntBASIC13.47□□□□□ -0.25
SOX3P41225 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX3P41225 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.47□□□□□ -0.25
SOX3P41225 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.47□□□□□ -0.25
SOX3P41225 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SOX3P41225 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
SOX3P41225 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.47□□□□□ -0.25
SOX3P41225 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SOX3P41225 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
SOX3P41225 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
SOX3P41225 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX3P41225 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX3P41225 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
SOX3P41225 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
SOX3P41225 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX3P41225 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX3P41225 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX3P41225 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX3P41225 ADM-202ENST00000524948 584 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX3P41225 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX3P41225 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX3P41225 AC091544.8-201ENST00000619490 361 ntBASIC13.46□□□□□ -0.25
SOX3P41225 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX3P41225 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms