Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.22■□□□□ 0.19
ERCC4Q92889 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.22■□□□□ 0.19
ERCC4Q92889 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.22■□□□□ 0.19
ERCC4Q92889 KRT90P-201ENST00000549264 1064 ntBASIC16.22■□□□□ 0.19
ERCC4Q92889 AC027307.3-201ENST00000594262 1100 ntBASIC16.22■□□□□ 0.19
ERCC4Q92889 AL136301.1-201ENST00000615830 422 ntBASIC16.22■□□□□ 0.19
ERCC4Q92889 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.22■□□□□ 0.19
ERCC4Q92889 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC4Q92889 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC16.22■□□□□ 0.19
ERCC4Q92889 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.22■□□□□ 0.19
ERCC4Q92889 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
ERCC4Q92889 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 STRCP1-201ENST00000509801 5328 ntBASIC16.21■□□□□ 0.19
ERCC4Q92889 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC16.21■□□□□ 0.19
ERCC4Q92889 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 LINC00567-201ENST00000569854 3409 ntBASIC16.21■□□□□ 0.19
ERCC4Q92889 AC004623.1-201ENST00000624592 2127 ntBASIC16.21■□□□□ 0.19
ERCC4Q92889 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ERCC4Q92889 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 MIR326-201ENST00000362220 95 ntBASIC16.21■□□□□ 0.19
ERCC4Q92889 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.21■□□□□ 0.19
ERCC4Q92889 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.21■□□□□ 0.19
ERCC4Q92889 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.21■□□□□ 0.19
ERCC4Q92889 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.21■□□□□ 0.19
ERCC4Q92889 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.21■□□□□ 0.19
ERCC4Q92889 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.21■□□□□ 0.19
ERCC4Q92889 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
ERCC4Q92889 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 AC233724.13-201ENST00000598383 410 ntBASIC16.21■□□□□ 0.19
ERCC4Q92889 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.21■□□□□ 0.19
ERCC4Q92889 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 IGHV3-72-202ENST00000621503 303 ntBASIC16.21■□□□□ 0.19
ERCC4Q92889 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC4Q92889 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC4Q92889 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC4Q92889 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
ERCC4Q92889 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.21■□□□□ 0.18
ERCC4Q92889 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC4Q92889 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC4Q92889 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
ERCC4Q92889 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC16.21■□□□□ 0.18
ERCC4Q92889 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
ERCC4Q92889 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC4Q92889 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC4Q92889 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
ERCC4Q92889 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC16.2■□□□□ 0.18
ERCC4Q92889 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
ERCC4Q92889 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
ERCC4Q92889 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
ERCC4Q92889 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC16.2■□□□□ 0.18
ERCC4Q92889 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.2■□□□□ 0.18
ERCC4Q92889 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC4Q92889 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms