Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.78□□□□□ -0.04
PTPN9P43378 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.78□□□□□ -0.04
PTPN9P43378 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 MIR4525-201ENST00000580000 75 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 RN7SL455P-201ENST00000580629 282 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 AC091544.8-201ENST00000619490 361 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 MARK2P9-201ENST00000430958 1727 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.78□□□□□ -0.04
PTPN9P43378 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
PTPN9P43378 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 AC015909.5-201ENST00000624336 2266 ntBASIC14.77□□□□□ -0.04
PTPN9P43378 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.77□□□□□ -0.04
PTPN9P43378 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.77□□□□□ -0.04
PTPN9P43378 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN9P43378 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.77□□□□□ -0.04
PTPN9P43378 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
PTPN9P43378 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN9P43378 AC006987.1-201ENST00000413610 527 ntBASIC14.77□□□□□ -0.05
PTPN9P43378 ACTG1P2-201ENST00000415776 1125 ntBASIC14.77□□□□□ -0.05
PTPN9P43378 ACTG1P11-201ENST00000425411 1125 ntBASIC14.77□□□□□ -0.05
PTPN9P43378 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.77□□□□□ -0.05
PTPN9P43378 SPTLC1P5-201ENST00000450718 252 ntBASIC14.77□□□□□ -0.05
PTPN9P43378 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.77□□□□□ -0.05
PTPN9P43378 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.77□□□□□ -0.05
PTPN9P43378 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.77□□□□□ -0.05
PTPN9P43378 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.77□□□□□ -0.05
PTPN9P43378 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.77□□□□□ -0.05
PTPN9P43378 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
PTPN9P43378 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN9P43378 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.77□□□□□ -0.05
PTPN9P43378 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN9P43378 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN9P43378 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN9P43378 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
PTPN9P43378 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 AC089987.1-201ENST00000551654 2209 ntBASIC14.76□□□□□ -0.05
PTPN9P43378 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PTPN9P43378 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 BX679664.3-201ENST00000414070 555 ntBASIC14.76□□□□□ -0.05
PTPN9P43378 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.76□□□□□ -0.05
PTPN9P43378 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 AC113935.1-201ENST00000471722 555 ntBASIC14.76□□□□□ -0.05
PTPN9P43378 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.76□□□□□ -0.05
PTPN9P43378 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.76□□□□□ -0.05
PTPN9P43378 AC005740.1-201ENST00000515639 522 ntBASIC14.76□□□□□ -0.05
PTPN9P43378 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.76□□□□□ -0.05
PTPN9P43378 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms