Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC10.96□□□□□ -0.66
HLA-DMBP28068 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC10.96□□□□□ -0.66
HLA-DMBP28068 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC10.96□□□□□ -0.66
HLA-DMBP28068 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 TSN-212ENST00000536142 3328 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 TCAF1P1-201ENST00000414990 2232 ntBASIC10.95□□□□□ -0.66
HLA-DMBP28068 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 GZMB-202ENST00000382540 816 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 RPL7P3-201ENST00000441388 714 ntBASIC10.95□□□□□ -0.66
HLA-DMBP28068 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC10.95□□□□□ -0.66
HLA-DMBP28068 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 HADH-202ENST00000403312 1752 ntTSL 5 BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AC020658.7-201ENST00000624274 2442 ntBASIC10.95□□□□□ -0.66
HLA-DMBP28068 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HLA-DMBP28068 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 STK25-235ENST00000543554 2556 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms