Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 BTNL10-201ENST00000595971 695 ntBASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AL603764.1-201ENST00000636452 321 ntBASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 DRD5P1-201ENST00000456605 1438 ntBASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 AL157996.1-201ENST00000624684 2299 ntBASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC13.46□□□□□ -0.26
DEPDC4Q8N2C3 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ARSEP1-201ENST00000420443 635 ntBASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC025580.1-201ENST00000559553 729 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AP001063.1-201ENST00000568332 529 ntBASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC233724.13-201ENST00000598383 410 ntBASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC107373.2-201ENST00000607735 490 ntBASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
DEPDC4Q8N2C3 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.44□□□□□ -0.26
DEPDC4Q8N2C3 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
DEPDC4Q8N2C3 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms