Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.83□□□□□ -0.19
FOXA1P55317 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA1P55317 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA1P55317 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA1P55317 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA1P55317 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA1P55317 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA1P55317 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA1P55317 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
FOXA1P55317 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA1P55317 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA1P55317 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.83□□□□□ -0.2
FOXA1P55317 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.83□□□□□ -0.2
FOXA1P55317 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA1P55317 AC006122.1-201ENST00000493323 440 ntBASIC13.83□□□□□ -0.2
FOXA1P55317 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 AL162426.1-201ENST00000624141 743 ntBASIC13.83□□□□□ -0.2
FOXA1P55317 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA1P55317 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA1P55317 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA1P55317 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
FOXA1P55317 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA1P55317 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 RCC2P1-201ENST00000452257 1476 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 OS9-218ENST00000551035 2246 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 AL391647.1-201ENST00000395664 511 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 KRT18P36-201ENST00000411618 1276 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA1P55317 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 AL160314.3-201ENST00000556041 767 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA1P55317 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 AC008687.7-202ENST00000637404 953 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 AL358472.5-202ENST00000641448 1267 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
FOXA1P55317 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms