Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC22.99■■□□□ 1.27
CUX1P39880 AC026412.1-206ENST00000502273 206 ntBASIC22.99■■□□□ 1.27
CUX1P39880 NF1P11-201ENST00000621292 1282 ntBASIC22.99■■□□□ 1.27
CUX1P39880 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC22.99■■□□□ 1.27
CUX1P39880 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC22.99■■□□□ 1.27
CUX1P39880 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CUX1P39880 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC22.99■■□□□ 1.27
CUX1P39880 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CUX1P39880 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC22.99■■□□□ 1.27
CUX1P39880 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
CUX1P39880 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CUX1P39880 AL121994.1-201ENST00000413189 402 ntBASIC22.98■■□□□ 1.27
CUX1P39880 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC22.98■■□□□ 1.27
CUX1P39880 GYG1-209ENST00000483267 801 ntTSL 2 BASIC22.98■■□□□ 1.27
CUX1P39880 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC22.98■■□□□ 1.27
CUX1P39880 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
CUX1P39880 AC087072.1-201ENST00000603727 421 ntBASIC22.98■■□□□ 1.27
CUX1P39880 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC22.98■■□□□ 1.27
CUX1P39880 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC22.98■■□□□ 1.27
CUX1P39880 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 AC140479.7-201ENST00000636301 2332 ntBASIC22.98■■□□□ 1.27
CUX1P39880 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
CUX1P39880 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC22.98■■□□□ 1.27
CUX1P39880 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC22.98■■□□□ 1.27
CUX1P39880 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CUX1P39880 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC22.98■■□□□ 1.27
CUX1P39880 RN7SL478P-201ENST00000584358 298 ntBASIC22.98■■□□□ 1.27
CUX1P39880 CLPP-205ENST00000596605 646 ntTSL 2 BASIC22.98■■□□□ 1.27
CUX1P39880 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC22.98■■□□□ 1.27
CUX1P39880 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 AP000437.1-201ENST00000624057 2085 ntBASIC22.97■■□□□ 1.27
CUX1P39880 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC22.97■■□□□ 1.27
CUX1P39880 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC22.97■■□□□ 1.27
CUX1P39880 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
CUX1P39880 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 AC061965.1-201ENST00000560524 1465 ntBASIC22.97■■□□□ 1.27
CUX1P39880 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC22.97■■□□□ 1.27
CUX1P39880 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC22.97■■□□□ 1.27
CUX1P39880 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC22.97■■□□□ 1.27
CUX1P39880 OLA1P2-201ENST00000395519 1264 ntBASIC22.97■■□□□ 1.27
CUX1P39880 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 RPL35P1-201ENST00000450819 370 ntBASIC22.97■■□□□ 1.27
CUX1P39880 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC22.97■■□□□ 1.27
CUX1P39880 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC22.97■■□□□ 1.27
CUX1P39880 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC22.97■■□□□ 1.27
CUX1P39880 AL137028.2-201ENST00000614601 256 ntBASIC22.97■■□□□ 1.27
CUX1P39880 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC22.97■■□□□ 1.27
CUX1P39880 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC22.97■■□□□ 1.27
CUX1P39880 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CUX1P39880 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC22.96■■□□□ 1.27
CUX1P39880 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC22.96■■□□□ 1.27
CUX1P39880 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC22.96■■□□□ 1.27
CUX1P39880 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CUX1P39880 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
CUX1P39880 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC22.96■■□□□ 1.27
CUX1P39880 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC22.96■■□□□ 1.27
CUX1P39880 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC22.96■■□□□ 1.27
CUX1P39880 AL356000.1-201ENST00000441073 1238 ntBASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms