Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.28■□□□□ 0.2
SMARCA1P28370 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.28■□□□□ 0.2
SMARCA1P28370 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 SIGLEC22P-201ENST00000599104 714 ntBASIC16.28■□□□□ 0.2
SMARCA1P28370 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.28■□□□□ 0.2
SMARCA1P28370 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC138894.2-201ENST00000602838 371 ntBASIC16.28■□□□□ 0.2
SMARCA1P28370 AL606495.2-201ENST00000605867 535 ntBASIC16.28■□□□□ 0.2
SMARCA1P28370 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC128714.1-201ENST00000637035 887 ntBASIC16.28■□□□□ 0.2
SMARCA1P28370 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
SMARCA1P28370 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.27■□□□□ 0.2
SMARCA1P28370 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 TBC1D27-202ENST00000424239 1573 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 AC008620.2-201ENST00000510294 1569 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.27■□□□□ 0.2
SMARCA1P28370 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.27■□□□□ 0.2
SMARCA1P28370 AL627422.1-201ENST00000434104 580 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.27■□□□□ 0.2
SMARCA1P28370 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.27■□□□□ 0.2
SMARCA1P28370 SCARNA12-201ENST00000459155 270 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.27■□□□□ 0.2
SMARCA1P28370 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.27■□□□□ 0.2
SMARCA1P28370 ORAOV1P1-201ENST00000503108 395 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SMARCA1P28370 PRKXP1-201ENST00000561423 1122 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 AC145285.5-201ENST00000562217 361 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SMARCA1P28370 MIR4522-201ENST00000584932 87 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 AC009145.4-201ENST00000625119 1294 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 AC068587.10-201ENST00000641210 219 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 AL139424.3-202ENST00000641619 917 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SMARCA1P28370 AC006372.4-201ENST00000624122 1543 ntBASIC16.27■□□□□ 0.2
SMARCA1P28370 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
SMARCA1P28370 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMARCA1P28370 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
SMARCA1P28370 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SMARCA1P28370 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.27■□□□□ 0.19
SMARCA1P28370 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SMARCA1P28370 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.27■□□□□ 0.19
SMARCA1P28370 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SMARCA1P28370 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SMARCA1P28370 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SMARCA1P28370 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.26■□□□□ 0.19
SMARCA1P28370 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.26■□□□□ 0.19
SMARCA1P28370 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.26■□□□□ 0.19
SMARCA1P28370 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.26■□□□□ 0.19
SMARCA1P28370 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.26■□□□□ 0.19
SMARCA1P28370 AC132825.4-202ENST00000578792 434 ntBASIC16.26■□□□□ 0.19
SMARCA1P28370 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SMARCA1P28370 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
SMARCA1P28370 AL353726.2-201ENST00000623259 884 ntBASIC16.26■□□□□ 0.19
SMARCA1P28370 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMARCA1P28370 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms