Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 MIR572-201ENST00000384983 95 ntBASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 MIR6084-201ENST00000622012 110 ntBASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.36■■□□□ 1.33
SLC44A3Q8N4M1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SLC44A3Q8N4M1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 IGHV3-19-201ENST00000521488 291 ntBASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SLC44A3Q8N4M1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 CCDC92B-201ENST00000575506 885 ntBASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.33■■□□□ 1.33
SLC44A3Q8N4M1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.33■■□□□ 1.32
SLC44A3Q8N4M1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 AC012414.1-201ENST00000556676 535 ntBASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 NTF6G-201ENST00000591094 616 ntBASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 AL354811.1-201ENST00000610286 706 ntBASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SLC44A3Q8N4M1 AC141586.4-201ENST00000624558 1573 ntBASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
SLC44A3Q8N4M1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.3■■□□□ 1.32
SLC44A3Q8N4M1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SLC44A3Q8N4M1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SLC44A3Q8N4M1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC44A3Q8N4M1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms