Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 EP400NL-214ENST00000641289 2402 ntBASIC21.91■■□□□ 1.1
FOXA1P55317 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
FOXA1P55317 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.91■■□□□ 1.1
FOXA1P55317 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.91■■□□□ 1.1
FOXA1P55317 AC074183.2-201ENST00000623112 922 ntBASIC21.91■■□□□ 1.1
FOXA1P55317 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
FOXA1P55317 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA1P55317 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.9■■□□□ 1.1
FOXA1P55317 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.9■■□□□ 1.1
FOXA1P55317 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
FOXA1P55317 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.9■■□□□ 1.1
FOXA1P55317 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.9■■□□□ 1.1
FOXA1P55317 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.9■■□□□ 1.1
FOXA1P55317 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA1P55317 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.9■■□□□ 1.1
FOXA1P55317 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.9■■□□□ 1.1
FOXA1P55317 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.9■■□□□ 1.1
FOXA1P55317 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.9■■□□□ 1.1
FOXA1P55317 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.89■■□□□ 1.1
FOXA1P55317 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
FOXA1P55317 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.89■■□□□ 1.09
FOXA1P55317 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.89■■□□□ 1.09
FOXA1P55317 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
FOXA1P55317 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
FOXA1P55317 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
FOXA1P55317 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
FOXA1P55317 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
FOXA1P55317 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
FOXA1P55317 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.88■■□□□ 1.09
FOXA1P55317 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
FOXA1P55317 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
FOXA1P55317 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.88■■□□□ 1.09
FOXA1P55317 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.88■■□□□ 1.09
FOXA1P55317 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
FOXA1P55317 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
FOXA1P55317 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
FOXA1P55317 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
FOXA1P55317 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 AC079630.1-202ENST00000618127 1840 ntBASIC21.87■■□□□ 1.09
FOXA1P55317 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.87■■□□□ 1.09
FOXA1P55317 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
FOXA1P55317 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.87■■□□□ 1.09
FOXA1P55317 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.87■■□□□ 1.09
FOXA1P55317 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.87■■□□□ 1.09
FOXA1P55317 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
FOXA1P55317 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
FOXA1P55317 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.86■■□□□ 1.09
FOXA1P55317 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.86■■□□□ 1.09
FOXA1P55317 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
FOXA1P55317 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.86■■□□□ 1.09
FOXA1P55317 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.86■■□□□ 1.09
FOXA1P55317 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.86■■□□□ 1.09
FOXA1P55317 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.86■■□□□ 1.09
FOXA1P55317 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.86■■□□□ 1.09
FOXA1P55317 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
FOXA1P55317 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
FOXA1P55317 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.86■■□□□ 1.09
FOXA1P55317 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
FOXA1P55317 AC004448.1-201ENST00000458332 883 ntBASIC21.85■■□□□ 1.09
FOXA1P55317 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.85■■□□□ 1.09
FOXA1P55317 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.84■■□□□ 1.09
FOXA1P55317 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.84■■□□□ 1.09
FOXA1P55317 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXA1P55317 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.84■■□□□ 1.09
FOXA1P55317 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
FOXA1P55317 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
FOXA1P55317 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXA1P55317 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.83■■□□□ 1.09
FOXA1P55317 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FOXA1P55317 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FOXA1P55317 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FOXA1P55317 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
FOXA1P55317 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
FOXA1P55317 AC103834.1-201ENST00000520383 144 ntBASIC21.83■■□□□ 1.09
FOXA1P55317 AL033527.3-201ENST00000566366 1196 ntBASIC21.83■■□□□ 1.09
FOXA1P55317 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
FOXA1P55317 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms