Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.39■■□□□ 1.66
PGK1P00558 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
PGK1P00558 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.39■■□□□ 1.66
PGK1P00558 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PGK1P00558 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.39■■□□□ 1.66
PGK1P00558 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
PGK1P00558 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.65
PGK1P00558 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
PGK1P00558 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.65
PGK1P00558 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.39■■□□□ 1.65
PGK1P00558 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
PGK1P00558 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PGK1P00558 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
PGK1P00558 MIR6084-201ENST00000622012 110 ntBASIC25.38■■□□□ 1.65
PGK1P00558 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.38■■□□□ 1.65
PGK1P00558 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PGK1P00558 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.38■■□□□ 1.65
PGK1P00558 DUSP8P4-201ENST00000399538 1761 ntBASIC25.38■■□□□ 1.65
PGK1P00558 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.37■■□□□ 1.65
PGK1P00558 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PGK1P00558 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PGK1P00558 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PGK1P00558 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.37■■□□□ 1.65
PGK1P00558 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PGK1P00558 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.37■■□□□ 1.65
PGK1P00558 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PGK1P00558 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.37■■□□□ 1.65
PGK1P00558 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PGK1P00558 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PGK1P00558 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.36■■□□□ 1.65
PGK1P00558 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
PGK1P00558 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PGK1P00558 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PGK1P00558 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PGK1P00558 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.36■■□□□ 1.65
PGK1P00558 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
PGK1P00558 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.35■■□□□ 1.65
PGK1P00558 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PGK1P00558 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PGK1P00558 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.35■■□□□ 1.65
PGK1P00558 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PGK1P00558 AICDA-202ENST00000537228 667 ntTSL 5 BASIC25.35■■□□□ 1.65
PGK1P00558 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC25.35■■□□□ 1.65
PGK1P00558 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.35■■□□□ 1.65
PGK1P00558 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.35■■□□□ 1.65
PGK1P00558 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PGK1P00558 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
PGK1P00558 HLA-L-211ENST00000482052 1765 ntBASIC25.35■■□□□ 1.65
PGK1P00558 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PGK1P00558 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PGK1P00558 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.35■■□□□ 1.65
PGK1P00558 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PGK1P00558 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
PGK1P00558 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PGK1P00558 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.34■■□□□ 1.65
PGK1P00558 AC027612.3-201ENST00000413684 1047 ntBASIC25.34■■□□□ 1.65
PGK1P00558 AC004911.1-201ENST00000416316 871 ntBASIC25.34■■□□□ 1.65
PGK1P00558 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PGK1P00558 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PGK1P00558 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.34■■□□□ 1.65
PGK1P00558 AL358852.1-201ENST00000623174 1268 ntBASIC25.34■■□□□ 1.65
PGK1P00558 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PGK1P00558 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.34■■□□□ 1.65
PGK1P00558 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
PGK1P00558 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
PGK1P00558 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
PGK1P00558 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PGK1P00558 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.33■■□□□ 1.65
PGK1P00558 AC141586.4-201ENST00000624558 1573 ntBASIC25.33■■□□□ 1.65
PGK1P00558 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PGK1P00558 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
PGK1P00558 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
PGK1P00558 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PGK1P00558 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.32■■□□□ 1.64
PGK1P00558 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PGK1P00558 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.32■■□□□ 1.64
PGK1P00558 IGHV3-19-201ENST00000521488 291 ntBASIC25.32■■□□□ 1.64
PGK1P00558 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.31■■□□□ 1.64
PGK1P00558 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.31■■□□□ 1.64
PGK1P00558 AC123595.1-201ENST00000440769 1046 ntBASIC25.31■■□□□ 1.64
PGK1P00558 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC25.31■■□□□ 1.64
PGK1P00558 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
PGK1P00558 ALDH1A3-203ENST00000557963 1670 ntBASIC25.31■■□□□ 1.64
PGK1P00558 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.3■■□□□ 1.64
PGK1P00558 AL161729.1-201ENST00000604104 1402 ntBASIC25.3■■□□□ 1.64
PGK1P00558 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC25.3■■□□□ 1.64
PGK1P00558 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 MIR572-201ENST00000384983 95 ntBASIC25.3■■□□□ 1.64
PGK1P00558 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.3■■□□□ 1.64
PGK1P00558 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.3■■□□□ 1.64
PGK1P00558 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
PGK1P00558 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PGK1P00558 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.3■■□□□ 1.64
PGK1P00558 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PGK1P00558 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms