Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.22■□□□□ 0.19
SYNGAP1Q96PV0 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 PYY2-201ENST00000315776 282 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AL161932.2-201ENST00000435436 679 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 LINC00634-202ENST00000505157 222 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC022447.6-201ENST00000515522 438 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC068867.1-201ENST00000559855 150 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 MIR5196-201ENST00000578146 115 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AL133467.4-201ENST00000602953 725 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AP003392.6-201ENST00000607709 325 ntBASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SYNGAP1Q96PV0 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.21■□□□□ 0.18
SYNGAP1Q96PV0 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 CELP-201ENST00000411440 1249 ntTSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 AC084752.1-201ENST00000509766 622 ntBASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 NDUFB10P1-201ENST00000567319 521 ntBASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SYNGAP1Q96PV0 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms