Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.15■□□□□ 0.18
CCNA1P78396 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.15■□□□□ 0.18
CCNA1P78396 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCNA1P78396 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCNA1P78396 KRT8P43-201ENST00000406052 1458 ntBASIC16.15■□□□□ 0.18
CCNA1P78396 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCNA1P78396 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCNA1P78396 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CCNA1P78396 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.15■□□□□ 0.18
CCNA1P78396 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.15■□□□□ 0.18
CCNA1P78396 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCNA1P78396 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.14■□□□□ 0.18
CCNA1P78396 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC16.14■□□□□ 0.18
CCNA1P78396 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.14■□□□□ 0.17
CCNA1P78396 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCNA1P78396 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCNA1P78396 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.14■□□□□ 0.17
CCNA1P78396 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CCNA1P78396 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CCNA1P78396 KRT18P4-201ENST00000422599 1288 ntBASIC16.14■□□□□ 0.17
CCNA1P78396 KRT18P15-201ENST00000458108 1291 ntBASIC16.14■□□□□ 0.17
CCNA1P78396 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC16.14■□□□□ 0.17
CCNA1P78396 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 NT5C-204ENST00000578337 582 ntTSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
CCNA1P78396 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC16.14■□□□□ 0.17
CCNA1P78396 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC16.14■□□□□ 0.17
CCNA1P78396 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.14■□□□□ 0.17
CCNA1P78396 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCNA1P78396 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
CCNA1P78396 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 ABCD1P4-201ENST00000399687 604 ntBASIC16.13■□□□□ 0.17
CCNA1P78396 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC16.13■□□□□ 0.17
CCNA1P78396 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC16.13■□□□□ 0.17
CCNA1P78396 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC16.13■□□□□ 0.17
CCNA1P78396 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.13■□□□□ 0.17
CCNA1P78396 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CCNA1P78396 AC025186.1-201ENST00000478174 870 ntBASIC16.13■□□□□ 0.17
CCNA1P78396 HNRNPA1P56-201ENST00000505767 954 ntBASIC16.13■□□□□ 0.17
CCNA1P78396 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.13■□□□□ 0.17
CCNA1P78396 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.13■□□□□ 0.17
CCNA1P78396 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 AP001527.2-201ENST00000614441 631 ntBASIC16.13■□□□□ 0.17
CCNA1P78396 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.13■□□□□ 0.17
CCNA1P78396 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.13■□□□□ 0.17
CCNA1P78396 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCNA1P78396 AC092384.3-202ENST00000564646 2873 ntBASIC16.12■□□□□ 0.17
CCNA1P78396 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 AC232323.1-201ENST00000540724 2099 ntBASIC16.12■□□□□ 0.17
CCNA1P78396 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms