Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 ZBTB12BP-201ENST00000314232 1122 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 AC005229.1-201ENST00000392885 409 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FAM197Y7-201ENST00000432892 766 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 FAM8A4P-201ENST00000435433 1213 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 CTBP2P5-201ENST00000454986 1264 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 AC027237.1-201ENST00000560942 655 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 MIR6775-201ENST00000617557 69 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 COX11-210ENST00000639671 696 ntBASIC11.01□□□□□ -0.65
HLA-DMBP28068 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 PDIA3P1-201ENST00000471856 1510 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC11□□□□□ -0.65
HLA-DMBP28068 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 TP73-213ENST00000604479 1623 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11□□□□□ -0.65
HLA-DMBP28068 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 RPS2P32-201ENST00000439199 892 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 KLF2P4-201ENST00000451959 1225 ntBASIC11□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms