Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 AC002472.3-201ENST00000640124 621 ntBASIC15.27■□□□□ 0.04
CCDC50Q8IVM0 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC50Q8IVM0 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 KRT8P28-201ENST00000433288 1390 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 TUBB8P4-201ENST00000511806 1324 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AC007389.4-201ENST00000454674 793 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 RN7SL837P-201ENST00000463010 287 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 RNA5SP486-201ENST00000515961 83 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AL354989.2-201ENST00000435838 1540 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 MIR193BHG-211ENST00000641433 5365 ntBASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC50Q8IVM0 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC50Q8IVM0 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms