Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 TUBB2BP1-201ENST00000404155 871 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 HSFY1P1-201ENST00000423928 1178 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC092810.2-201ENST00000431570 362 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 AL161932.2-201ENST00000435436 679 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC015818.1-201ENST00000451011 244 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HLA-CQ95604 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AP003040.1-201ENST00000532044 1024 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC023051.2-201ENST00000541141 460 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC105148.1-201ENST00000604961 409 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC009041.4-201ENST00000620075 638 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 MEP1AP1-201ENST00000636082 1097 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HLA-CQ95604 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.61□□□□□ -0.07
HLA-CQ95604 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 U3.5-201ENST00000363448 216 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 CCL19-202ENST00000378800 414 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC14.6□□□□□ -0.07
HLA-CQ95604 BX088651.3-201ENST00000418155 352 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 HMGA1P2-201ENST00000430198 324 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 AC093106.1-201ENST00000437271 352 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 CCND3P1-201ENST00000438347 580 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC14.6□□□□□ -0.07
HLA-CQ95604 GULOP-201ENST00000454030 748 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 RNASEH2CP1-201ENST00000454281 502 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 RN7SL684P-201ENST00000465665 294 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 FAM187B2P-201ENST00000577135 713 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 NAT9-204ENST00000578822 839 ntTSL 3 BASIC14.6□□□□□ -0.07
HLA-CQ95604 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC14.6□□□□□ -0.07
HLA-CQ95604 AC087072.1-201ENST00000603727 421 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 AC112220.4-201ENST00000604982 1263 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 AC027281.2-201ENST00000623856 713 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 Z82244.2-201ENST00000632196 448 ntBASIC14.6□□□□□ -0.07
HLA-CQ95604 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-CQ95604 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
HLA-CQ95604 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-CQ95604 NKILA-202ENST00000614771 2598 ntBASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms