Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 KRT8P28-201ENST00000433288 1390 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC005562.1-201ENST00000583030 3219 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AP000593.2-201ENST00000542775 1433 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC007274.1-201ENST00000439805 662 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC022210.1-201ENST00000449856 793 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AP001889.1-201ENST00000525414 633 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 OR10B1P-201ENST00000601666 907 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC133552.6-201ENST00000613406 534 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC072061.1-201ENST00000569710 2234 ntBASIC11.04□□□□□ -0.64
HLA-DMBP28068 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 PPT1-213ENST00000641319 2388 ntBASIC11.03□□□□□ -0.64
HLA-DMBP28068 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 LBX2-201ENST00000341396 886 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 AC104989.1-201ENST00000519711 778 ntBASIC11.03□□□□□ -0.64
HLA-DMBP28068 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 AP005482.1-201ENST00000563722 1273 ntBASIC11.03□□□□□ -0.64
HLA-DMBP28068 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC11.03□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms