Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX2P35548 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.79□□□□□ -0.2
MSX2P35548 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.79□□□□□ -0.2
MSX2P35548 KRT18P13-201ENST00000400056 1290 ntBASIC13.79□□□□□ -0.2
MSX2P35548 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 CNN2P11-201ENST00000429351 262 ntBASIC13.79□□□□□ -0.2
MSX2P35548 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 KLF2P3-201ENST00000451977 1087 ntBASIC13.79□□□□□ -0.2
MSX2P35548 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
MSX2P35548 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.79□□□□□ -0.2
MSX2P35548 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.79□□□□□ -0.2
MSX2P35548 AC023310.3-201ENST00000557027 670 ntBASIC13.79□□□□□ -0.2
MSX2P35548 AC100756.1-201ENST00000562736 682 ntBASIC13.79□□□□□ -0.2
MSX2P35548 AC138749.3-201ENST00000567691 622 ntBASIC13.79□□□□□ -0.2
MSX2P35548 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.79□□□□□ -0.2
MSX2P35548 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.79□□□□□ -0.2
MSX2P35548 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 AC116165.1-201ENST00000611806 668 ntBASIC13.79□□□□□ -0.2
MSX2P35548 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
MSX2P35548 AC007431.3-201ENST00000623221 587 ntBASIC13.79□□□□□ -0.2
MSX2P35548 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 AC064801.2-201ENST00000625052 1303 ntBASIC13.79□□□□□ -0.2
MSX2P35548 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
MSX2P35548 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX2P35548 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX2P35548 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX2P35548 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 DDC-214ENST00000622873 1839 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 PER1-202ENST00000354903 3115 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 RPSAP43-201ENST00000402237 625 ntBASIC13.78□□□□□ -0.2
MSX2P35548 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX2P35548 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 AC009477.1-201ENST00000452936 217 ntBASIC13.78□□□□□ -0.2
MSX2P35548 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 AC135586.1-201ENST00000539323 574 ntBASIC13.78□□□□□ -0.2
MSX2P35548 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX2P35548 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX2P35548 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX2P35548 AC120045.2-201ENST00000567334 178 ntBASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms