Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 CFAP43-204ENST00000369720 2876 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 FUBP1-202ENST00000370767 2524 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 UEVLD-213ENST00000543987 2503 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 KLLN-201ENST00000445946 4277 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 BIVM-201ENST00000257336 3859 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 KRT18P34-201ENST00000488218 1270 ntBASIC8.88□□□□□ -0.99
LINC00643Q86TS7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AL031055.1-201ENST00000606362 631 ntBASIC8.88□□□□□ -0.99
LINC00643Q86TS7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 CEACAM20-206ENST00000621342 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AC073592.4-201ENST00000623827 446 ntBASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AP000867.4-201ENST00000641616 219 ntBASIC8.88□□□□□ -0.99
LINC00643Q86TS7 SLC45A4-203ENST00000519067 7483 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 ABL2-210ENST00000511413 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 ACTN2-201ENST00000366578 4863 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 SLC3A1-202ENST00000409229 2909 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 MGLL-205ENST00000453507 4552 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AC009533.1-201ENST00000539757 3158 ntBASIC8.88□□□□□ -0.99
LINC00643Q86TS7 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 CLDN19-201ENST00000296387 2859 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 IFT22-211ENST00000621899 2272 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 PGGHG-202ENST00000409479 3062 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 NFASC-206ENST00000404076 5728 ntTSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 MTHFSD-201ENST00000360900 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 WDR43-202ENST00000407426 3533 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 NLRP1-202ENST00000269280 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 ACLY-204ENST00000537919 2974 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 ALOX5-208ENST00000612635 1945 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 GDPD2-201ENST00000374382 2169 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 RNF150-206ENST00000515673 9805 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 AGAP6-203ENST00000618025 2690 ntAPPRIS ALT2 TSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 C5orf15-201ENST00000231512 2358 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ADGRD1-202ENST00000335486 2892 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 LINC01634-201ENST00000443243 2379 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 PTK7-204ENST00000349241 3801 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CDCA2-202ENST00000380665 3565 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 PAK5-203ENST00000378429 4780 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ICK-202ENST00000356971 6227 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CYP26B1-202ENST00000412253 4025 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ZC3H18-202ENST00000452588 3211 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AL590552.1-201ENST00000623164 1770 ntBASIC8.87□□□□□ -0.99
LINC00643Q86TS7 MAN2B1-201ENST00000221363 3170 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 Z97192.1-201ENST00000391625 3894 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 FLCN-201ENST00000285071 3638 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 PLEKHG4-202ENST00000379344 4513 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 GXYLT1P3-201ENST00000453058 1193 ntBASIC8.87□□□□□ -0.99
LINC00643Q86TS7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC8.87□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms