Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RNF4P78317 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RNF4P78317 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 ISCA2P1-201ENST00000425548 448 ntBASIC13.36□□□□□ -0.27
RNF4P78317 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 AL161670.2-201ENST00000557650 1227 ntBASIC13.36□□□□□ -0.27
RNF4P78317 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.36□□□□□ -0.27
RNF4P78317 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 MIR3619-201ENST00000579667 83 ntBASIC13.36□□□□□ -0.27
RNF4P78317 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RNF4P78317 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.36□□□□□ -0.27
RNF4P78317 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.36□□□□□ -0.27
RNF4P78317 AC138969.2-201ENST00000532739 9932 ntBASIC13.36□□□□□ -0.27
RNF4P78317 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 SLC25A24P2-201ENST00000415059 510 ntBASIC13.35□□□□□ -0.27
RNF4P78317 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 AC092580.1-201ENST00000433998 658 ntBASIC13.35□□□□□ -0.27
RNF4P78317 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.35□□□□□ -0.27
RNF4P78317 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 AC006335.1-201ENST00000445200 547 ntBASIC13.35□□□□□ -0.27
RNF4P78317 IGHJ2P-201ENST00000454480 60 ntBASIC13.35□□□□□ -0.27
RNF4P78317 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.35□□□□□ -0.27
RNF4P78317 AC012618.1-201ENST00000461223 412 ntBASIC13.35□□□□□ -0.27
RNF4P78317 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 AC024681.1-201ENST00000521917 487 ntBASIC13.35□□□□□ -0.27
RNF4P78317 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 AC138627.1-207ENST00000641560 1006 ntBASIC13.35□□□□□ -0.27
RNF4P78317 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
RNF4P78317 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 LINC01165-201ENST00000445190 1623 ntBASIC13.35□□□□□ -0.27
RNF4P78317 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
RNF4P78317 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
RNF4P78317 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNF4P78317 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms