Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.21□□□□□ -0.61
CXCL1P09341 PACSIN1-207ENST00000620693 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 TUBB8P4-201ENST00000511806 1324 ntBASIC11.21□□□□□ -0.61
CXCL1P09341 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 YBX2P1-201ENST00000394192 760 ntBASIC11.21□□□□□ -0.61
CXCL1P09341 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 MCCD1P2-201ENST00000423228 335 ntBASIC11.21□□□□□ -0.61
CXCL1P09341 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC11.21□□□□□ -0.61
CXCL1P09341 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC11.21□□□□□ -0.61
CXCL1P09341 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC11.21□□□□□ -0.61
CXCL1P09341 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC11.21□□□□□ -0.61
CXCL1P09341 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.61
CXCL1P09341 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC11.21□□□□□ -0.61
CXCL1P09341 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 CPT1A-205ENST00000539743 2382 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 AAGAB-207ENST00000561452 2251 ntTSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 ZNF287-201ENST00000395824 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 AC004241.1-201ENST00000547799 3299 ntTSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 WDR27-203ENST00000448612 3178 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC11.21□□□□□ -0.62
CXCL1P09341 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
CXCL1P09341 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.21□□□□□ -0.62
CXCL1P09341 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CXCL1P09341 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 TEX35-203ENST00000367641 2377 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 AL121723.1-201ENST00000445194 1519 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 PAX2-201ENST00000355243 4057 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 AL157414.3-201ENST00000624276 1954 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 PAX6-207ENST00000379129 2614 ntAPPRIS P4 TSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.2□□□□□ -0.62
CXCL1P09341 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC11.2□□□□□ -0.62
CXCL1P09341 RPL13P2-201ENST00000440687 659 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.2□□□□□ -0.62
CXCL1P09341 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC11.2□□□□□ -0.62
CXCL1P09341 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC025048.3-201ENST00000590609 569 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 AC000095.1-201ENST00000603208 874 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 AC140113.2-201ENST00000604370 208 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC005702.4-201ENST00000618393 416 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 PLAT-202ENST00000352041 2516 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 AL928654.5-201ENST00000624831 2501 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 CRHR2-201ENST00000341843 3131 ntTSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 EPB41L1-206ENST00000373950 3631 ntTSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 AC027020.2-201ENST00000602585 2389 ntBASIC11.2□□□□□ -0.62
CXCL1P09341 SRRM2-AS1-201ENST00000382313 3523 ntTSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms