Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 SPCS2P2-201ENST00000603270 608 ntBASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC60Q8IWA6 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 AC007952.5-201ENST00000572818 1486 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 AL627422.1-201ENST00000434104 580 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 RN7SL181P-201ENST00000462921 277 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 MRPL22P1-201ENST00000505398 616 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 AL512310.5-201ENST00000551999 515 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 MIR3147-201ENST00000577811 66 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 AC242376.2-201ENST00000619355 883 ntBASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.93■□□□□ 0.14
CCDC60Q8IWA6 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 AC078991.1-201ENST00000437297 610 ntBASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC60Q8IWA6 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms