Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL5A3P25940 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.46■□□□□ 0.39
COL5A3P25940 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.46■□□□□ 0.39
COL5A3P25940 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.46■□□□□ 0.39
COL5A3P25940 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC17.46■□□□□ 0.39
COL5A3P25940 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 HDGF-202ENST00000368206 960 ntTSL 5 BASIC17.46■□□□□ 0.39
COL5A3P25940 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC17.46■□□□□ 0.39
COL5A3P25940 RN7SL121P-201ENST00000584223 273 ntBASIC17.46■□□□□ 0.39
COL5A3P25940 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
COL5A3P25940 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC17.46■□□□□ 0.39
COL5A3P25940 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 RCC2P5-201ENST00000492126 1487 ntBASIC17.46■□□□□ 0.38
COL5A3P25940 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL5A3P25940 HNRNPA1P25-201ENST00000422644 937 ntBASIC17.45■□□□□ 0.38
COL5A3P25940 HNRNPA3P12-201ENST00000437410 1063 ntBASIC17.45■□□□□ 0.38
COL5A3P25940 NDUFB2P1-201ENST00000506966 295 ntBASIC17.45■□□□□ 0.38
COL5A3P25940 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC17.45■□□□□ 0.38
COL5A3P25940 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.45■□□□□ 0.38
COL5A3P25940 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A3P25940 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC17.45■□□□□ 0.38
COL5A3P25940 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
COL5A3P25940 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.44■□□□□ 0.38
COL5A3P25940 FAU-201ENST00000279259 461 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A3P25940 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 RBP4-203ENST00000371469 814 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 AC000077.1-201ENST00000420012 953 ntBASIC17.44■□□□□ 0.38
COL5A3P25940 AC010202.1-201ENST00000551181 405 ntBASIC17.44■□□□□ 0.38
COL5A3P25940 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC17.44■□□□□ 0.38
COL5A3P25940 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 GUCY2EP-203ENST00000531117 1918 ntBASIC17.44■□□□□ 0.38
COL5A3P25940 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A3P25940 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A3P25940 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A3P25940 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL5A3P25940 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC17.44■□□□□ 0.38
COL5A3P25940 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A3P25940 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL5A3P25940 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A3P25940 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
COL5A3P25940 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL5A3P25940 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC17.43■□□□□ 0.38
COL5A3P25940 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A3P25940 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A3P25940 RHOQP2-201ENST00000449922 579 ntBASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms