Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
SDCBPO00560 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
SDCBPO00560 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC12.37□□□□□ -0.43
SDCBPO00560 AC093433.1-201ENST00000458048 571 ntBASIC12.37□□□□□ -0.43
SDCBPO00560 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.37□□□□□ -0.43
SDCBPO00560 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.37□□□□□ -0.43
SDCBPO00560 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 ABBA01031660.1-201ENST00000635219 756 ntBASIC12.37□□□□□ -0.43
SDCBPO00560 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC12.37□□□□□ -0.43
SDCBPO00560 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC12.37□□□□□ -0.43
SDCBPO00560 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 LINC02486-201ENST00000604157 3000 ntBASIC12.37□□□□□ -0.43
SDCBPO00560 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
SDCBPO00560 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
SDCBPO00560 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.37□□□□□ -0.43
SDCBPO00560 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SDCBPO00560 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.37□□□□□ -0.43
SDCBPO00560 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 AC004241.5-201ENST00000623870 2448 ntBASIC12.36□□□□□ -0.43
SDCBPO00560 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 AC092053.3-201ENST00000641308 4975 ntBASIC12.36□□□□□ -0.43
SDCBPO00560 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.36□□□□□ -0.43
SDCBPO00560 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 AC022137.2-201ENST00000503482 481 ntBASIC12.36□□□□□ -0.43
SDCBPO00560 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.36□□□□□ -0.43
SDCBPO00560 GREM1-201ENST00000560677 623 ntTSL 4 BASIC12.36□□□□□ -0.43
SDCBPO00560 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 AC138761.1-201ENST00000584393 385 ntBASIC12.36□□□□□ -0.43
SDCBPO00560 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.36□□□□□ -0.43
SDCBPO00560 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
SDCBPO00560 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SDCBPO00560 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.36□□□□□ -0.43
SDCBPO00560 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
SDCBPO00560 AC068760.1-201ENST00000493579 1953 ntBASIC12.36□□□□□ -0.43
SDCBPO00560 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
SDCBPO00560 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms