Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 AC007389.4-201ENST00000454674 793 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 FTH1P14-201ENST00000482930 551 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 USP32P1-208ENST00000506594 1164 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 RNA5SP486-201ENST00000515961 83 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 AC008735.3-201ENST00000596646 500 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 AC132938.4-201ENST00000623835 848 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 AL354989.2-201ENST00000435838 1540 ntBASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.94□□□□□ -0.18
CLHC1Q8NHS4 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AL022313.4-201ENST00000562756 2046 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ARSEP1-201ENST00000420443 635 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 INE1-201ENST00000456273 945 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC078819.1-201ENST00000547454 765 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC012085.1-201ENST00000548270 765 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC027237.1-201ENST00000560942 655 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC138951.2-201ENST00000623455 1161 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC025048.6-201ENST00000634326 1161 ntBASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLHC1Q8NHS4 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CLHC1Q8NHS4 AC064801.2-201ENST00000625052 1303 ntBASIC13.92□□□□□ -0.18
CLHC1Q8NHS4 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.92□□□□□ -0.18
CLHC1Q8NHS4 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.92□□□□□ -0.18
CLHC1Q8NHS4 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms