Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
PRKDCP78527 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC9.94□□□□□ -0.82
PRKDCP78527 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
PRKDCP78527 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
PRKDCP78527 AC018529.2-202ENST00000611482 3087 ntBASIC9.94□□□□□ -0.82
PRKDCP78527 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
PRKDCP78527 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC9.94□□□□□ -0.82
PRKDCP78527 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
PRKDCP78527 AP005117.1-202ENST00000581724 1908 ntBASIC9.94□□□□□ -0.82
PRKDCP78527 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
PRKDCP78527 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 NME6-211ENST00000447314 621 ntTSL 3 BASIC9.93□□□□□ -0.82
PRKDCP78527 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 AC025178.1-201ENST00000503441 834 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 AKR1B1P3-201ENST00000525311 588 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 MUTYH-236ENST00000529984 1029 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 HNRNPA1P69-201ENST00000552536 933 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC9.93□□□□□ -0.82
PRKDCP78527 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 GSN-209ENST00000449733 2702 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
PRKDCP78527 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 AC118758.1-201ENST00000448242 564 ntTSL 4 BASIC9.93□□□□□ -0.82
PRKDCP78527 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC9.93□□□□□ -0.82
PRKDCP78527 LDHAL6CP-201ENST00000502352 1142 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 AC067942.2-201ENST00000506227 1268 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 COQ10BP2-201ENST00000513804 724 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 BMF-209ENST00000561282 747 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC9.93□□□□□ -0.82
PRKDCP78527 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 EPM2A-214ENST00000638783 801 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 EPM2A-229ENST00000640980 647 ntTSL 3 BASIC9.93□□□□□ -0.82
PRKDCP78527 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 SNORA30.1-201ENST00000363193 129 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 RNA5SP84-201ENST00000364740 107 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 PMF1-201ENST00000368273 884 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 GSTM2P1-201ENST00000405166 654 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 RNA5SP407-201ENST00000410275 110 ntBASIC9.93□□□□□ -0.82
PRKDCP78527 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 AL121983.2-204ENST00000430592 448 ntTSL 3 BASIC9.93□□□□□ -0.82
PRKDCP78527 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC9.93□□□□□ -0.82
PRKDCP78527 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC9.93□□□□□ -0.82
PRKDCP78527 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC9.93□□□□□ -0.82
PRKDCP78527 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
PRKDCP78527 AKR1C5P-201ENST00000427165 609 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 AL162595.1-201ENST00000429227 868 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 IFI27L1-205ENST00000554544 406 ntTSL 3 BASIC9.92□□□□□ -0.82
PRKDCP78527 IGHV3OR16-11-201ENST00000565524 349 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 GH2-205ENST00000622506 702 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC9.92□□□□□ -0.82
PRKDCP78527 USP8-219ENST00000625664 1568 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 OS9-207ENST00000439210 1946 ntTSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 MRPL55-213ENST00000366740 644 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 AC079250.1-201ENST00000456046 531 ntBASIC9.92□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms