Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AL121949.3-201ENST00000406684 385 ntBASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 CD37-203ENST00000426897 1204 ntTSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AC099328.1-201ENST00000498809 1030 ntBASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AC098657.1-201ENST00000416270 1135 ntBASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AC090820.1-201ENST00000519722 591 ntBASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHANK3Q9BYB0 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 AL513477.1-201ENST00000602865 2407 ntBASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 HLF-202ENST00000430986 1385 ntTSL 2 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 HSD3BP1-201ENST00000286193 1111 ntBASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 MIR632-201ENST00000385193 94 ntBASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 OR4A49P-201ENST00000527050 632 ntBASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 CICP16-201ENST00000502609 2813 ntBASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.97■□□□□ 0.47
SHANK3Q9BYB0 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 AC008620.2-201ENST00000510294 1569 ntBASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 OR7E155P-201ENST00000412208 1014 ntBASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 RPSAP70-201ENST00000504462 864 ntBASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 AP000920.1-201ENST00000531824 344 ntBASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHANK3Q9BYB0 HSPA7-201ENST00000445535 1927 ntBASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms