Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PCDH1Q08174 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
PCDH1Q08174 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
PCDH1Q08174 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
PCDH1Q08174 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 OR8S1-201ENST00000310194 1080 ntBASIC13.98□□□□□ -0.17
PCDH1Q08174 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AC022210.1-201ENST00000449856 793 ntBASIC13.98□□□□□ -0.17
PCDH1Q08174 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 KRT18P15-201ENST00000458108 1291 ntBASIC13.98□□□□□ -0.17
PCDH1Q08174 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.98□□□□□ -0.17
PCDH1Q08174 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 RNA5SP412-201ENST00000516234 123 ntBASIC13.98□□□□□ -0.17
PCDH1Q08174 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 RBM8B-201ENST00000555532 525 ntBASIC13.98□□□□□ -0.17
PCDH1Q08174 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 AC005324.6-201ENST00000587972 613 ntBASIC13.98□□□□□ -0.17
PCDH1Q08174 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.98□□□□□ -0.17
PCDH1Q08174 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.98□□□□□ -0.17
PCDH1Q08174 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PCDH1Q08174 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
PCDH1Q08174 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.97□□□□□ -0.17
PCDH1Q08174 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.97□□□□□ -0.17
PCDH1Q08174 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.97□□□□□ -0.17
PCDH1Q08174 AC087386.2-201ENST00000623212 4637 ntBASIC13.97□□□□□ -0.17
PCDH1Q08174 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 AC015818.8-201ENST00000587907 1519 ntBASIC13.97□□□□□ -0.17
PCDH1Q08174 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.97□□□□□ -0.17
PCDH1Q08174 HLA-V-201ENST00000429037 534 ntBASIC13.97□□□□□ -0.17
PCDH1Q08174 KLF2P1-201ENST00000447438 1042 ntBASIC13.97□□□□□ -0.17
PCDH1Q08174 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
PCDH1Q08174 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.97□□□□□ -0.17
PCDH1Q08174 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.97□□□□□ -0.17
PCDH1Q08174 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.97□□□□□ -0.17
PCDH1Q08174 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 AC090386.2-201ENST00000623010 1039 ntBASIC13.97□□□□□ -0.17
PCDH1Q08174 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.97□□□□□ -0.17
PCDH1Q08174 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PCDH1Q08174 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.97□□□□□ -0.17
PCDH1Q08174 LAP3P2-201ENST00000454686 1454 ntBASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms