Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.97□□□□□ -0.17
SLC28A1O00337 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.97□□□□□ -0.17
SLC28A1O00337 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.97□□□□□ -0.17
SLC28A1O00337 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
SLC28A1O00337 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.97□□□□□ -0.17
SLC28A1O00337 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 CNN2P8-201ENST00000421872 913 ntBASIC13.97□□□□□ -0.17
SLC28A1O00337 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.97□□□□□ -0.17
SLC28A1O00337 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
SLC28A1O00337 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.97□□□□□ -0.17
SLC28A1O00337 USP32P1-208ENST00000506594 1164 ntBASIC13.97□□□□□ -0.17
SLC28A1O00337 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.97□□□□□ -0.17
SLC28A1O00337 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 ZACNP1-201ENST00000612259 710 ntBASIC13.97□□□□□ -0.17
SLC28A1O00337 BAP1-211ENST00000615113 489 ntBASIC13.97□□□□□ -0.17
SLC28A1O00337 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SLC28A1O00337 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.97□□□□□ -0.17
SLC28A1O00337 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SLC28A1O00337 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.97□□□□□ -0.17
SLC28A1O00337 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 FAM90A12P-201ENST00000519497 2375 ntBASIC13.96□□□□□ -0.17
SLC28A1O00337 FAM90A24P-201ENST00000520792 2369 ntBASIC13.96□□□□□ -0.17
SLC28A1O00337 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.96□□□□□ -0.17
SLC28A1O00337 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AC010141.1-201ENST00000411585 623 ntBASIC13.96□□□□□ -0.17
SLC28A1O00337 AC112492.5-201ENST00000421897 457 ntBASIC13.96□□□□□ -0.17
SLC28A1O00337 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SLC28A1O00337 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
SLC28A1O00337 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AC078819.1-201ENST00000547454 765 ntBASIC13.96□□□□□ -0.17
SLC28A1O00337 AC012085.1-201ENST00000548270 765 ntBASIC13.96□□□□□ -0.17
SLC28A1O00337 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.96□□□□□ -0.17
SLC28A1O00337 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.96□□□□□ -0.17
SLC28A1O00337 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.96□□□□□ -0.17
SLC28A1O00337 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.96□□□□□ -0.17
SLC28A1O00337 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SLC28A1O00337 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
SLC28A1O00337 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms