Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NEU3-205ENST00000531619 582 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 U62317.3-201ENST00000608319 855 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 UST-201ENST00000367463 4198 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 P2RY8-201ENST00000381297 4198 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 AC112504.1-201ENST00000623415 1841 ntBASIC4.54□□□□□ -1.68
SYNE1Q8NF91 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SYNE1Q8NF91 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC114812.1-204ENST00000449669 728 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TMCO5B-205ENST00000530020 894 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL353770.1-201ENST00000614915 403 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CICP23-201ENST00000605013 2741 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PXN-204ENST00000424649 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CDC25B-201ENST00000245960 3597 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 KRT18P25-201ENST00000508931 1278 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DUX4L47-201ENST00000566374 394 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AP000346.4-201ENST00000614827 381 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC007718.1-201ENST00000621078 280 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL139385.1-201ENST00000611744 3272 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC243772.2-201ENST00000428289 3543 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CAMK2B-209ENST00000395749 4447 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 Z97192.1-201ENST00000391625 3894 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC127383.1-201ENST00000444697 1800 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LRRC59-203ENST00000576448 1531 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC020910.5-201ENST00000623668 1865 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC073413.1-201ENST00000603927 732 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC022400.8-201ENST00000623453 3599 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ABR-228ENST00000574437 3196 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms