Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AP000845.1-201ENST00000581677 2131 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AL158070.2-201ENST00000623713 1621 ntBASIC13.98□□□□□ -0.17
COL28A1Q2UY09 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AC084752.1-201ENST00000509766 622 ntBASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 MIR4472-1-201ENST00000584349 80 ntBASIC13.98□□□□□ -0.17
COL28A1Q2UY09 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AL122018.1-201ENST00000446607 2310 ntBASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.98□□□□□ -0.17
COL28A1Q2UY09 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.98□□□□□ -0.17
COL28A1Q2UY09 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC041040.2-201ENST00000622926 2899 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AL583805.1-201ENST00000391389 531 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 HNRNPA1P58-201ENST00000403629 610 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 VDAC1P1-201ENST00000439229 848 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AP000358.1-201ENST00000456260 156 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 RN7SL396P-201ENST00000471086 295 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms