Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC11.28□□□□□ -0.6
CXCL1P09341 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.28□□□□□ -0.6
CXCL1P09341 AL035456.1-201ENST00000456064 1369 ntBASIC11.28□□□□□ -0.6
CXCL1P09341 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC11.28□□□□□ -0.6
CXCL1P09341 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CXCL1P09341 AL359845.1-201ENST00000458202 1648 ntBASIC11.27□□□□□ -0.6
CXCL1P09341 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 AC092028.1-202ENST00000641483 3547 ntBASIC11.27□□□□□ -0.6
CXCL1P09341 AC092028.1-201ENST00000641781 3540 ntBASIC11.27□□□□□ -0.6
CXCL1P09341 UBTFL8-201ENST00000426903 2112 ntBASIC11.27□□□□□ -0.6
CXCL1P09341 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 DEK-201ENST00000244776 1441 ntTSL 2 BASIC11.27□□□□□ -0.6
CXCL1P09341 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC11.27□□□□□ -0.6
CXCL1P09341 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
CXCL1P09341 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC11.27□□□□□ -0.6
CXCL1P09341 TOLLIP-207ENST00000527886 3666 ntTSL 2 BASIC11.27□□□□□ -0.6
CXCL1P09341 CYP2AB1P-202ENST00000454440 1456 ntBASIC11.27□□□□□ -0.6
CXCL1P09341 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 PI4KAP2-211ENST00000486209 3213 ntTSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 PTGR2-204ENST00000555228 2543 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 AC126564.1-201ENST00000623628 2013 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 UXT-AS1-201ENST00000590504 1525 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
CXCL1P09341 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.27□□□□□ -0.61
CXCL1P09341 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC11.27□□□□□ -0.61
CXCL1P09341 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC11.27□□□□□ -0.61
CXCL1P09341 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 KRT18P43-201ENST00000469825 1281 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC11.27□□□□□ -0.61
CXCL1P09341 KRT8P48-201ENST00000515599 1220 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 BANF1P1-201ENST00000553684 263 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 COX5A-206ENST00000568783 571 ntTSL 3 BASIC11.27□□□□□ -0.61
CXCL1P09341 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 AC092865.6-201ENST00000642101 219 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 LGR6-203ENST00000367278 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 HLA-A-201ENST00000376802 1334 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC11.27□□□□□ -0.61
CXCL1P09341 Z97205.2-201ENST00000564697 1639 ntBASIC11.27□□□□□ -0.61
CXCL1P09341 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
CXCL1P09341 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CXCL1P09341 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC11.27□□□□□ -0.61
CXCL1P09341 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
CXCL1P09341 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 SPCS2-209ENST00000610881 2711 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 EDARADD-204ENST00000637660 2803 ntTSL 5 BASIC11.26□□□□□ -0.61
CXCL1P09341 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
CXCL1P09341 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms