Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 MESTP3-201ENST00000503460 968 ntBASIC16.53■□□□□ 0.24
ERCC4Q92889 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.53■□□□□ 0.24
ERCC4Q92889 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.53■□□□□ 0.24
ERCC4Q92889 ENPP7P5-201ENST00000541031 1031 ntBASIC16.53■□□□□ 0.24
ERCC4Q92889 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
ERCC4Q92889 MIR3197-201ENST00000582241 73 ntBASIC16.53■□□□□ 0.24
ERCC4Q92889 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.53■□□□□ 0.24
ERCC4Q92889 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.53■□□□□ 0.24
ERCC4Q92889 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.53■□□□□ 0.24
ERCC4Q92889 AC138466.3-201ENST00000619983 221 ntBASIC16.53■□□□□ 0.24
ERCC4Q92889 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
ERCC4Q92889 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.53■□□□□ 0.24
ERCC4Q92889 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC16.53■□□□□ 0.24
ERCC4Q92889 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
ERCC4Q92889 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
ERCC4Q92889 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
ERCC4Q92889 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC16.52■□□□□ 0.24
ERCC4Q92889 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.52■□□□□ 0.24
ERCC4Q92889 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ERCC4Q92889 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.52■□□□□ 0.24
ERCC4Q92889 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
ERCC4Q92889 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 AC087499.6-201ENST00000411576 835 ntBASIC16.52■□□□□ 0.24
ERCC4Q92889 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.52■□□□□ 0.24
ERCC4Q92889 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.52■□□□□ 0.24
ERCC4Q92889 AC245100.3-201ENST00000441281 285 ntBASIC16.52■□□□□ 0.24
ERCC4Q92889 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.52■□□□□ 0.24
ERCC4Q92889 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.52■□□□□ 0.24
ERCC4Q92889 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.52■□□□□ 0.24
ERCC4Q92889 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.52■□□□□ 0.24
ERCC4Q92889 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.52■□□□□ 0.24
ERCC4Q92889 AL033527.5-201ENST00000641382 801 ntBASIC16.52■□□□□ 0.24
ERCC4Q92889 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ERCC4Q92889 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC16.52■□□□□ 0.24
ERCC4Q92889 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
ERCC4Q92889 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ERCC4Q92889 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ERCC4Q92889 AL138709.1-201ENST00000614840 1693 ntBASIC16.52■□□□□ 0.23
ERCC4Q92889 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ERCC4Q92889 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
ERCC4Q92889 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.51■□□□□ 0.23
ERCC4Q92889 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC16.51■□□□□ 0.23
ERCC4Q92889 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ERCC4Q92889 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AL162726.2-201ENST00000438986 1017 ntBASIC16.51■□□□□ 0.23
ERCC4Q92889 AC002472.2-201ENST00000442739 958 ntBASIC16.51■□□□□ 0.23
ERCC4Q92889 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC106760.1-201ENST00000508690 800 ntBASIC16.51■□□□□ 0.23
ERCC4Q92889 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC190387.1-201ENST00000551683 408 ntBASIC16.51■□□□□ 0.23
ERCC4Q92889 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.51■□□□□ 0.23
ERCC4Q92889 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.51■□□□□ 0.23
ERCC4Q92889 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ERCC4Q92889 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.51■□□□□ 0.23
ERCC4Q92889 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ERCC4Q92889 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC4Q92889 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms