Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 PPP1R2P4-201ENST00000424051 595 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 RBPMSLP-201ENST00000433427 502 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 KRT19P4-201ENST00000443208 943 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 KRT18P62-201ENST00000446618 1287 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 RN7SL605P-201ENST00000577229 281 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 AL136379.1-201ENST00000623471 2642 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 LILRP1-201ENST00000444199 1370 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC007952.5-201ENST00000572818 1486 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC022080.1-201ENST00000366255 781 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC006328.1-201ENST00000437571 379 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 TREX1-203ENST00000456089 629 ntTSL 3 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 B9D1-206ENST00000461069 923 ntTSL 2 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC008494.1-201ENST00000497612 796 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 EEF1GP8-201ENST00000506566 1154 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 TMA16-204ENST00000508268 608 ntTSL 2 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 RN7SKP155-201ENST00000516031 288 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 NAT9-219ENST00000582524 573 ntTSL 4 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC048382.6-201ENST00000621980 1223 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 AC132872.4-202ENST00000622924 2756 ntBASIC17■□□□□ 0.31
SMC1BQ8NDV3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17■□□□□ 0.31
SMC1BQ8NDV3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SMC1BQ8NDV3 ODCP-201ENST00000459650 1639 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AL596087.1-201ENST00000400979 1969 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 SNRPD2P2-201ENST00000473818 333 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms