Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 LINC00634-202ENST00000505157 222 ntBASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 AC084752.1-201ENST00000509766 622 ntBASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 OR5BD1P-201ENST00000532527 817 ntBASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 LAP3P2-201ENST00000454686 1454 ntBASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
NPAS3Q8IXF0 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 LINC02228-204ENST00000642115 2962 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC018442.1-201ENST00000421439 2061 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AGGF1P1-201ENST00000509500 2073 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC018638.5-201ENST00000450885 754 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC017007.3-201ENST00000479865 435 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC026410.1-201ENST00000507366 1101 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC140113.1-201ENST00000603467 169 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC007250.1-201ENST00000608934 338 ntBASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.91□□□□□ -0.02
NPAS3Q8IXF0 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms