Protein–RNA interactions for Protein: Q9UGM1

CHRNA9, Neuronal acetylcholine receptor subunit alpha-9, humanhuman

Predictions only

Length 479 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA9Q9UGM1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CHRNA9Q9UGM1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CHRNA9Q9UGM1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CHRNA9Q9UGM1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.68■□□□□ 0.9
CHRNA9Q9UGM1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.68■□□□□ 0.9
CHRNA9Q9UGM1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA9Q9UGM1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA9Q9UGM1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA9Q9UGM1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CHRNA9Q9UGM1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA9Q9UGM1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA9Q9UGM1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 AC092028.1-203ENST00000608262 953 ntBASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHRNA9Q9UGM1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHRNA9Q9UGM1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.64■□□□□ 0.9
CHRNA9Q9UGM1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHRNA9Q9UGM1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.64■□□□□ 0.9
CHRNA9Q9UGM1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA9Q9UGM1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHRNA9Q9UGM1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA9Q9UGM1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 MIR6722-201ENST00000617286 78 ntBASIC20.61■□□□□ 0.89
CHRNA9Q9UGM1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.6■□□□□ 0.89
CHRNA9Q9UGM1 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms