Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
ABCA3Q99758 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.84■■■□□ 2.53
ABCA3Q99758 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC30.84■■■□□ 2.53
ABCA3Q99758 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
ABCA3Q99758 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC30.83■■■□□ 2.53
ABCA3Q99758 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC30.83■■■□□ 2.53
ABCA3Q99758 RAP2CP1-201ENST00000605103 478 ntBASIC30.83■■■□□ 2.53
ABCA3Q99758 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
ABCA3Q99758 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
ABCA3Q99758 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC30.81■■■□□ 2.52
ABCA3Q99758 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.81■■■□□ 2.52
ABCA3Q99758 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
ABCA3Q99758 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
ABCA3Q99758 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
ABCA3Q99758 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.8■■■□□ 2.52
ABCA3Q99758 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC30.8■■■□□ 2.52
ABCA3Q99758 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC30.8■■■□□ 2.52
ABCA3Q99758 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC30.8■■■□□ 2.52
ABCA3Q99758 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.8■■■□□ 2.52
ABCA3Q99758 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
ABCA3Q99758 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
ABCA3Q99758 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC30.79■■■□□ 2.52
ABCA3Q99758 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC30.79■■■□□ 2.52
ABCA3Q99758 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
ABCA3Q99758 pRNA.6-201ENST00000610482 90 ntBASIC30.79■■■□□ 2.52
ABCA3Q99758 pRNA.5-201ENST00000612139 90 ntBASIC30.79■■■□□ 2.52
ABCA3Q99758 pRNA.11-201ENST00000618423 90 ntBASIC30.79■■■□□ 2.52
ABCA3Q99758 pRNA.13-201ENST00000619112 90 ntBASIC30.79■■■□□ 2.52
ABCA3Q99758 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC30.78■■■□□ 2.52
ABCA3Q99758 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC30.78■■■□□ 2.52
ABCA3Q99758 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
ABCA3Q99758 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC30.78■■■□□ 2.52
ABCA3Q99758 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
ABCA3Q99758 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC30.78■■■□□ 2.52
ABCA3Q99758 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
ABCA3Q99758 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC30.78■■■□□ 2.52
ABCA3Q99758 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC30.78■■■□□ 2.52
ABCA3Q99758 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
ABCA3Q99758 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC30.77■■■□□ 2.52
ABCA3Q99758 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
ABCA3Q99758 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC30.77■■■□□ 2.52
ABCA3Q99758 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
ABCA3Q99758 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
ABCA3Q99758 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
ABCA3Q99758 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
ABCA3Q99758 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
ABCA3Q99758 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
ABCA3Q99758 AL022069.1-201ENST00000568025 1636 ntBASIC30.76■■■□□ 2.51
ABCA3Q99758 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.76■■■□□ 2.51
ABCA3Q99758 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC30.76■■■□□ 2.51
ABCA3Q99758 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.75■■■□□ 2.51
ABCA3Q99758 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC30.75■■■□□ 2.51
ABCA3Q99758 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC30.75■■■□□ 2.51
ABCA3Q99758 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC30.75■■■□□ 2.51
ABCA3Q99758 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
ABCA3Q99758 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
ABCA3Q99758 ABHD17AP1-201ENST00000358206 933 ntBASIC30.74■■■□□ 2.51
ABCA3Q99758 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC30.74■■■□□ 2.51
ABCA3Q99758 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
ABCA3Q99758 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC30.74■■■□□ 2.51
ABCA3Q99758 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
ABCA3Q99758 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC30.73■■■□□ 2.51
ABCA3Q99758 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
ABCA3Q99758 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
ABCA3Q99758 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
ABCA3Q99758 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
ABCA3Q99758 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
ABCA3Q99758 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC30.72■■■□□ 2.51
ABCA3Q99758 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC30.72■■■□□ 2.51
ABCA3Q99758 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
ABCA3Q99758 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
ABCA3Q99758 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
ABCA3Q99758 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC30.71■■■□□ 2.51
ABCA3Q99758 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
ABCA3Q99758 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC30.71■■■□□ 2.51
ABCA3Q99758 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
ABCA3Q99758 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
ABCA3Q99758 TK2-208ENST00000545043 1120 ntTSL 2 BASIC30.7■■■□□ 2.51
ABCA3Q99758 AC010525.1-201ENST00000585559 441 ntBASIC30.7■■■□□ 2.51
ABCA3Q99758 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC30.7■■■□□ 2.51
ABCA3Q99758 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
ABCA3Q99758 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC30.7■■■□□ 2.51
ABCA3Q99758 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
ABCA3Q99758 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC30.7■■■□□ 2.51
ABCA3Q99758 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC30.7■■■□□ 2.5
ABCA3Q99758 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.5
ABCA3Q99758 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
ABCA3Q99758 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
ABCA3Q99758 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
ABCA3Q99758 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
ABCA3Q99758 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
ABCA3Q99758 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
ABCA3Q99758 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC30.68■■■□□ 2.5
ABCA3Q99758 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
ABCA3Q99758 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
ABCA3Q99758 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
ABCA3Q99758 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
ABCA3Q99758 GXYLT1P2-201ENST00000433312 1230 ntBASIC30.68■■■□□ 2.5
ABCA3Q99758 EMC9-206ENST00000560403 872 ntTSL 2 BASIC30.68■■■□□ 2.5
ABCA3Q99758 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC30.68■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms