Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC30.75■■■□□ 2.51
USP54Q70EL1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USP54Q70EL1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.74■■■□□ 2.51
USP54Q70EL1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC30.74■■■□□ 2.51
USP54Q70EL1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP54Q70EL1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC30.74■■■□□ 2.51
USP54Q70EL1 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.74■■■□□ 2.51
USP54Q70EL1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
USP54Q70EL1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
USP54Q70EL1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
USP54Q70EL1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
USP54Q70EL1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
USP54Q70EL1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP54Q70EL1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
USP54Q70EL1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC30.73■■■□□ 2.51
USP54Q70EL1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
USP54Q70EL1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC30.73■■■□□ 2.51
USP54Q70EL1 AC233992.3-201ENST00000607491 485 ntBASIC30.73■■■□□ 2.51
USP54Q70EL1 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.72■■■□□ 2.51
USP54Q70EL1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC30.72■■■□□ 2.51
USP54Q70EL1 AC027612.3-201ENST00000413684 1047 ntBASIC30.72■■■□□ 2.51
USP54Q70EL1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
USP54Q70EL1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
USP54Q70EL1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.71■■■□□ 2.51
USP54Q70EL1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP54Q70EL1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC30.71■■■□□ 2.51
USP54Q70EL1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP54Q70EL1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP54Q70EL1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP54Q70EL1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC30.71■■■□□ 2.51
USP54Q70EL1 IRS3P-201ENST00000223076 1006 ntBASIC30.71■■■□□ 2.51
USP54Q70EL1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP54Q70EL1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC30.71■■■□□ 2.51
USP54Q70EL1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USP54Q70EL1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.7■■■□□ 2.51
USP54Q70EL1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.7■■■□□ 2.51
USP54Q70EL1 AL162430.1-201ENST00000480705 870 ntBASIC30.7■■■□□ 2.5
USP54Q70EL1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC30.7■■■□□ 2.5
USP54Q70EL1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP54Q70EL1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP54Q70EL1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.69■■■□□ 2.5
USP54Q70EL1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
USP54Q70EL1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC30.69■■■□□ 2.5
USP54Q70EL1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC30.69■■■□□ 2.5
USP54Q70EL1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP54Q70EL1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
USP54Q70EL1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
USP54Q70EL1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
USP54Q70EL1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.68■■■□□ 2.5
USP54Q70EL1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
USP54Q70EL1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC30.68■■■□□ 2.5
USP54Q70EL1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP54Q70EL1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
USP54Q70EL1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC30.68■■■□□ 2.5
USP54Q70EL1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
USP54Q70EL1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP54Q70EL1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP54Q70EL1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
USP54Q70EL1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP54Q70EL1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC30.67■■■□□ 2.5
USP54Q70EL1 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP54Q70EL1 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
USP54Q70EL1 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC30.66■■■□□ 2.5
USP54Q70EL1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.66■■■□□ 2.5
USP54Q70EL1 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP54Q70EL1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
USP54Q70EL1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP54Q70EL1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP54Q70EL1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP54Q70EL1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP54Q70EL1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP54Q70EL1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC30.65■■■□□ 2.5
USP54Q70EL1 AL031602.1-201ENST00000633169 911 ntBASIC30.65■■■□□ 2.5
USP54Q70EL1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.65■■■□□ 2.5
USP54Q70EL1 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP54Q70EL1 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP54Q70EL1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC30.65■■■□□ 2.5
USP54Q70EL1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC30.65■■■□□ 2.5
USP54Q70EL1 AC092666.2-201ENST00000613287 246 ntBASIC30.65■■■□□ 2.5
USP54Q70EL1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
USP54Q70EL1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.64■■■□□ 2.5
USP54Q70EL1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP54Q70EL1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
USP54Q70EL1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.49
USP54Q70EL1 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP54Q70EL1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
USP54Q70EL1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.63■■■□□ 2.49
USP54Q70EL1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.63■■■□□ 2.49
USP54Q70EL1 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
USP54Q70EL1 AC141586.4-201ENST00000624558 1573 ntBASIC30.62■■■□□ 2.49
USP54Q70EL1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.62■■■□□ 2.49
USP54Q70EL1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC30.62■■■□□ 2.49
USP54Q70EL1 IGHV3-19-201ENST00000521488 291 ntBASIC30.62■■■□□ 2.49
USP54Q70EL1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC30.62■■■□□ 2.49
USP54Q70EL1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC30.62■■■□□ 2.49
USP54Q70EL1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP54Q70EL1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP54Q70EL1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC30.61■■■□□ 2.49
USP54Q70EL1 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP54Q70EL1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms