Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 AL121749.1-202ENST00000609313 2153 ntBASIC18.81■□□□□ 0.6
CSPG4Q6UVK1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 HLA-L-209ENST00000420110 1011 ntBASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 AC027612.3-201ENST00000413684 1047 ntBASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CSPG4Q6UVK1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 MIR572-201ENST00000384983 95 ntBASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CSPG4Q6UVK1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 CCDC92B-201ENST00000575506 885 ntBASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 RAP2CP1-201ENST00000605103 478 ntBASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 NTF6G-201ENST00000591094 616 ntBASIC18.78■□□□□ 0.6
CSPG4Q6UVK1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 TERF1P2-201ENST00000583350 1212 ntBASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 TSPY26P-201ENST00000476365 1326 ntBASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 AC092803.2-201ENST00000564287 1899 ntBASIC18.77■□□□□ 0.6
CSPG4Q6UVK1 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CSPG4Q6UVK1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CSPG4Q6UVK1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 AC126544.1-201ENST00000580842 1059 ntBASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CSPG4Q6UVK1 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms