Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.75■■□□□ 1.07
COL28A1Q2UY09 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
COL28A1Q2UY09 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 YBX1P1-201ENST00000445822 960 ntBASIC21.74■■□□□ 1.07
COL28A1Q2UY09 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL28A1Q2UY09 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.73■■□□□ 1.07
COL28A1Q2UY09 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.73■■□□□ 1.07
COL28A1Q2UY09 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 AC011298.3-201ENST00000615796 283 ntBASIC21.72■■□□□ 1.07
COL28A1Q2UY09 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.72■■□□□ 1.07
COL28A1Q2UY09 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.71■■□□□ 1.07
COL28A1Q2UY09 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
COL28A1Q2UY09 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL28A1Q2UY09 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL28A1Q2UY09 AC093323.1-202ENST00000635031 2045 ntBASIC21.7■■□□□ 1.06
COL28A1Q2UY09 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.7■■□□□ 1.06
COL28A1Q2UY09 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
COL28A1Q2UY09 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL28A1Q2UY09 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL28A1Q2UY09 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL28A1Q2UY09 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL28A1Q2UY09 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL28A1Q2UY09 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL28A1Q2UY09 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL28A1Q2UY09 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.69■■□□□ 1.06
COL28A1Q2UY09 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.68■■□□□ 1.06
COL28A1Q2UY09 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.68■■□□□ 1.06
COL28A1Q2UY09 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL28A1Q2UY09 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 AC099791.2-201ENST00000605725 427 ntBASIC21.67■■□□□ 1.06
COL28A1Q2UY09 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.67■■□□□ 1.06
COL28A1Q2UY09 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 AL138724.1-201ENST00000606771 1088 ntBASIC21.66■■□□□ 1.06
COL28A1Q2UY09 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.66■■□□□ 1.06
COL28A1Q2UY09 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms