Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC14.82□□□□□ -0.04
COL9A1P20849 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC14.82□□□□□ -0.04
COL9A1P20849 AC025186.1-201ENST00000478174 870 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 CCNL2P1-201ENST00000512846 969 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 RNA5SP406-201ENST00000516106 112 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC14.82□□□□□ -0.04
COL9A1P20849 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC14.82□□□□□ -0.04
COL9A1P20849 AC004801.1-201ENST00000549557 360 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 LINC02349-201ENST00000561386 963 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 AC083964.1-201ENST00000607549 630 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 AC084782.3-201ENST00000612282 578 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 AC020763.2-201ENST00000623155 1255 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 METTL15-211ENST00000634762 718 ntTSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 AL162727.3-201ENST00000635661 2787 ntBASIC14.82□□□□□ -0.04
COL9A1P20849 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL9A1P20849 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.82□□□□□ -0.04
COL9A1P20849 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC14.82□□□□□ -0.04
COL9A1P20849 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 AC018629.1-201ENST00000623381 1736 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
COL9A1P20849 PIFO-201ENST00000369737 746 ntTSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
COL9A1P20849 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 AL137244.1-201ENST00000422931 865 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.81□□□□□ -0.04
COL9A1P20849 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 AC092910.2-201ENST00000491262 348 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC14.81□□□□□ -0.04
COL9A1P20849 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC14.81□□□□□ -0.04
COL9A1P20849 MTND2P31-201ENST00000512602 616 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC14.81□□□□□ -0.04
COL9A1P20849 MEG8-217ENST00000556637 924 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC14.81□□□□□ -0.04
COL9A1P20849 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 MIR2392-201ENST00000584881 84 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 CLPP-205ENST00000596605 646 ntTSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 ST5-261ENST00000626808 1071 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL9A1P20849 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms