Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 NUS1P3-201ENST00000423502 862 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AL512638.1-201ENST00000457493 794 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 VDAC1P7-201ENST00000462417 847 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 GAPDHP40-201ENST00000505218 1006 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SRD5A3P1-201ENST00000603021 949 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 BX539320.1-201ENST00000623759 877 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
CHMP1AQ9HD42 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.39
CHMP1AQ9HD42 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
CHMP1AQ9HD42 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC015909.5-201ENST00000624336 2266 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 KRT8P22-201ENST00000562317 1415 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 NUTM2HP-201ENST00000442076 2498 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC015818.8-201ENST00000587907 1519 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC016397.2-201ENST00000624848 1985 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AL589987.1-201ENST00000453380 819 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 KRT8P24-201ENST00000560290 1559 ntBASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.64□□□□□ -0.39
CHMP1AQ9HD42 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms