Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 TPT1P11-201ENST00000458482 498 ntBASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AC106794.1-201ENST00000506935 792 ntBASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AC005962.1-201ENST00000584100 773 ntBASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AL136295.7-201ENST00000619226 1200 ntBASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 GPR182-203ENST00000622922 591 ntBASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.48□□□□□ -0.09
TRIM39Q9HCM9 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TMBIM7P-202ENST00000641474 1516 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC104073.2-201ENST00000453737 312 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC091804.1-201ENST00000486888 567 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 ZNF767P-206ENST00000513792 565 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC022447.6-201ENST00000515522 438 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC044849.1-201ENST00000519737 1188 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 RBM8B-201ENST00000555532 525 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AL160314.3-201ENST00000556041 767 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC244452.3-201ENST00000636814 210 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC068587.8-201ENST00000641239 219 ntBASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms