Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 FAM90A2P-201ENST00000511144 1395 ntBASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 FAM90A25P-201ENST00000528404 1395 ntBASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 LINC01165-201ENST00000445190 1623 ntBASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4AQ9BY43 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 AC092580.1-201ENST00000433998 658 ntBASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PTPA-217ENST00000434095 870 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 NUP210P1-202ENST00000504322 710 ntBASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 MIR4754-201ENST00000582477 89 ntBASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 AC020922.3-201ENST00000595064 547 ntBASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4AQ9BY43 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 BANF1P3-201ENST00000412556 261 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 AC007274.2-201ENST00000421675 662 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 PDIA3P2-201ENST00000428073 158 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 DUX4L50-201ENST00000455245 715 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 KRT18P15-201ENST00000458108 1291 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 KRT8P1-201ENST00000557533 1207 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 AC242376.1-201ENST00000559033 726 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 AC093752.3-201ENST00000567343 901 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 AL022334.2-201ENST00000610000 484 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms