Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 KRT18P15-201ENST00000458108 1291 ntBASIC16.08■□□□□ 0.16
COL11A1P12107 KRT18P37-201ENST00000520711 1282 ntBASIC16.08■□□□□ 0.16
COL11A1P12107 AC092862.1-201ENST00000541534 533 ntBASIC16.08■□□□□ 0.16
COL11A1P12107 AL118516.1-201ENST00000564152 670 ntBASIC16.08■□□□□ 0.16
COL11A1P12107 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.08■□□□□ 0.16
COL11A1P12107 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.07■□□□□ 0.16
COL11A1P12107 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC16.07■□□□□ 0.16
COL11A1P12107 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL11A1P12107 OR2W2P-201ENST00000406313 909 ntBASIC16.07■□□□□ 0.16
COL11A1P12107 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC16.07■□□□□ 0.16
COL11A1P12107 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC16.07■□□□□ 0.16
COL11A1P12107 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC16.07■□□□□ 0.16
COL11A1P12107 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC16.07■□□□□ 0.16
COL11A1P12107 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.07■□□□□ 0.16
COL11A1P12107 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.07■□□□□ 0.16
COL11A1P12107 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
COL11A1P12107 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL11A1P12107 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.06■□□□□ 0.16
COL11A1P12107 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL11A1P12107 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.06■□□□□ 0.16
COL11A1P12107 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 AL512599.1-201ENST00000430724 685 ntBASIC16.06■□□□□ 0.16
COL11A1P12107 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 AC005722.1-201ENST00000431878 964 ntBASIC16.06■□□□□ 0.16
COL11A1P12107 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC16.06■□□□□ 0.16
COL11A1P12107 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC16.06■□□□□ 0.16
COL11A1P12107 AC026470.1-201ENST00000478038 846 ntBASIC16.06■□□□□ 0.16
COL11A1P12107 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC16.06■□□□□ 0.16
COL11A1P12107 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC16.06■□□□□ 0.16
COL11A1P12107 DLK1-205ENST00000556051 469 ntTSL 2 BASIC16.06■□□□□ 0.16
COL11A1P12107 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 AC046158.3-201ENST00000624947 2558 ntBASIC16.06■□□□□ 0.16
COL11A1P12107 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.06■□□□□ 0.16
COL11A1P12107 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.06■□□□□ 0.16
COL11A1P12107 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
COL11A1P12107 RPL13AP3-202ENST00000494676 1473 ntBASIC16.06■□□□□ 0.16
COL11A1P12107 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL11A1P12107 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.06■□□□□ 0.16
COL11A1P12107 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.06■□□□□ 0.16
COL11A1P12107 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL11A1P12107 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC16.05■□□□□ 0.16
COL11A1P12107 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC16.05■□□□□ 0.16
COL11A1P12107 GNG10P1-201ENST00000452289 199 ntBASIC16.05■□□□□ 0.16
COL11A1P12107 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.05■□□□□ 0.16
COL11A1P12107 RN7SL582P-201ENST00000491078 279 ntBASIC16.05■□□□□ 0.16
COL11A1P12107 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.05■□□□□ 0.16
COL11A1P12107 AC132825.4-202ENST00000578792 434 ntBASIC16.05■□□□□ 0.16
COL11A1P12107 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC16.05■□□□□ 0.16
COL11A1P12107 AL009176.1-201ENST00000607876 650 ntBASIC16.05■□□□□ 0.16
COL11A1P12107 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL11A1P12107 ESR1-214ENST00000638569 132 ntTSL 5 BASIC16.05■□□□□ 0.16
COL11A1P12107 PES1P2-201ENST00000449745 1735 ntBASIC16.05■□□□□ 0.16
COL11A1P12107 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL11A1P12107 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL11A1P12107 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.05■□□□□ 0.16
COL11A1P12107 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms