Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 FAM58CP-201ENST00000435741 640 ntBASIC11.77□□□□□ -0.53
HMGB3O15347 TIMM8BP1-201ENST00000452384 211 ntBASIC11.77□□□□□ -0.53
HMGB3O15347 PPIE-208ENST00000470213 927 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC11.77□□□□□ -0.53
HMGB3O15347 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC11.77□□□□□ -0.53
HMGB3O15347 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
HMGB3O15347 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 AC034105.1-201ENST00000563488 319 ntBASIC11.77□□□□□ -0.53
HMGB3O15347 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC11.77□□□□□ -0.53
HMGB3O15347 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 APC2-203ENST00000535453 11656 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 WIPF1-204ENST00000392547 4587 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 PID1-202ENST00000392054 2745 ntTSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC11.77□□□□□ -0.53
HMGB3O15347 ERCC6L2-201ENST00000288985 4564 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HMGB3O15347 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 AL137783.1-201ENST00000623494 1896 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 SHPRH-202ENST00000367503 5237 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 AGAP10P-201ENST00000454844 2418 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 ABCC5-201ENST00000265586 5712 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 MCM3AP-201ENST00000291688 6193 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 KIAA0556-201ENST00000261588 6616 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 ABL2-204ENST00000502732 12144 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 MRPL3P1-201ENST00000400109 1033 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 AC004945.1-201ENST00000416738 983 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC11.76□□□□□ -0.53
HMGB3O15347 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.76□□□□□ -0.53
HMGB3O15347 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 AC026120.1-201ENST00000611536 926 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC11.76□□□□□ -0.53
HMGB3O15347 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 LONRF2-201ENST00000393437 13912 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 RN7SL832P-201ENST00000607781 1756 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 TIAM2-203ENST00000360366 5771 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HMGB3O15347 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.76□□□□□ -0.53
HMGB3O15347 TCAM1P-207ENST00000485295 1537 ntBASIC11.76□□□□□ -0.53
HMGB3O15347 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
HMGB3O15347 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 TNRC18P1-201ENST00000502875 3650 ntBASIC11.75□□□□□ -0.53
HMGB3O15347 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms