Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 AL356488.3-201ENST00000608574 2888 ntBASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
DEPDC4Q8N2C3 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 NME2P1-201ENST00000426182 414 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 RPL13P2-201ENST00000440687 659 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 MYCLP2-201ENST00000449268 967 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 RARRES2P5-201ENST00000564013 466 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 AC036164.1-201ENST00000570544 333 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 MIR3908-201ENST00000579798 126 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 AC093726.1-201ENST00000608064 963 ntBASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
DEPDC4Q8N2C3 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
DEPDC4Q8N2C3 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC019294.4-201ENST00000561777 2905 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC092053.3-201ENST00000641308 4975 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms