Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AP001267.2-201ENST00000532619 2086 ntBASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AC092658.1-201ENST00000505836 891 ntBASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
NUP54Q7Z3B4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 MYADML-201ENST00000474610 2147 ntBASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 MIR4783-201ENST00000580343 82 ntBASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AC007663.3-201ENST00000609632 465 ntBASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 MIR6720-201ENST00000611664 98 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms